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    Blog →5 min read2025-03-08· Kleaner PRO Team

    Junctions, Symlinks and Hardlinks: The Three NTFS Links That Break Your Disk Math

    Windows can show the same file in several places at once, and nearly every strange folder on your system drive is built on that trick. The three NTFS link types — hardlink, junction and symbolic link — explain why folder sizes lie, why deleting a “duplicate” can kill the original, and how Windows itself is wired.

    Three mechanisms, one idea: point somewhere else

    A hardlink is a second directory entry for the same file: both names point at the same MFT record, and NTFS keeps a link counter — delete one name and the data survives until the last link goes. Hardlinks work for files only, never for folders, and never across volumes. This is the trick behind WinSxS: the component store, System32 and mountains of update backups share the same physical files, so each “copy” costs nothing extra on disk.

    A junction is a reparse point on a directory — a Windows 2000 technology that redirects one folder to another on the same machine. That is how Windows builds compatibility ghosts like “Documents and Settings” pointing at C:\Users. A symbolic link is the modern, more capable version: it can target files as well as folders, use relative paths and cross volumes, but creating one needs an elevated prompt or Developer Mode.

    The commands, and what they actually create

    Everything is done with mklink, and the switches are the whole story. Open an elevated Command Prompt and the three forms below cover ninety percent of real cases. Verify the result with dir /AL — reparse points show up as <SYMLINK>, <SYMLINKD> or <JUNCTION>, with their targets in brackets.

    • mklink /H backup.txt original.txt — a hardlink: two names, one file, zero extra bytes
    • mklink /J C:\Link C:\RealFolder — a junction: old, fast, folders on the same volume only
    • mklink /D C:\Link C:\RealFolder — a directory symbolic link: needs admin rights or Developer Mode
    • fsutil hardlink list file.txt — shows every name the data is reachable under
    • dir /AL — lists the reparse points in a folder, with type and target

    Where links bite: backups, cleaners and moves

    Naive space counters report hardlinked files once per link, which is how “dedupe” tools proudly announce 40 gigabytes of imaginary savings on a healthy Windows install. Some cleanup utilities chase junctions into their targets and delete real data through the back door; reputable ones skip reparse points entirely. And if you drag a folder containing a junction to another drive, Explorer may quietly replace the link with a full copy of the target — several gigabytes appearing out of nowhere.

    The safe habits are simple. Use links for structure, not for storage, and document every junction you create at the root of a data drive. And never trust a folder-size number on a volume that was not scanned with hardlinks in mind — before deleting an apparent duplicate, run fsutil hardlink list, because if the data has two names, you are not looking at a copy at all.

    Questions and Answers

    Is a junction the same as a shortcut?

    No. A shortcut is a .lnk file that each application has to understand; a junction works at the filesystem level, so every program sees the target folder's contents transparently.

    Does deleting a hardlink delete the original file?

    No. The data disappears only when the last hardlink to it is deleted; until then, every name is an equal owner, not a reference to some “real” original.

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    Read next

    The Complete Windows 11 Cleanup Guide (2026): what is safe to delete and what breaks the system→Windows 11 privacy in 2026: 14 telemetry settings worth checking→SSD and HDD in 2026: defragmentation, TRIM, and myths that need to die→

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